Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004111.1 Corchorus olitorius cultivar O-4 contig04124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1522
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.25


Found at i:586 original size:21 final size:20

Alignment explanation


    Indices: 537--587  Score: 50
    Period size: 20  Copynumber: 2.5  Consensus size: 20

        527 GGCGAGCCTG

                    *           
        537 AACCACTCGCCCTCACCTTT
          1 AACCACTCACCCTCACCTTT

            *   *                
        557 GACCGCTCACCCATCA-CTTT
          1 AACCACTCACCC-TCACCTTT

                       
        577 CAACCACTCAC
          1 -AACCACTCAC

        588 TCATTTACCG


Statistics
Matches: 24,  Mismatches: 5, Indels: 3
        0.75            0.16        0.09

Matches are distributed among these distances:
  20   13  0.54
  21   11  0.46

ACGTcount: A:0.24, C:0.49, G:0.06, T:0.22


Consensus pattern (20 bp):   
AACCACTCACCCTCACCTTT
Done.