Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004122.1 Corchorus olitorius cultivar O-4 contig04135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29


Found at i:27 original size:21 final size:21

Alignment explanation


    Indices: 1--41  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

                                 
          1 CTTGGAACTTGCTCCAATGAG
          1 CTTGGAACTTGCTCCAATGAG

                                
         22 CTTGGAACTTGCTCCAATGA
          1 CTTGGAACTTGCTCCAATGA

         42 ACTTCTAGCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29


Consensus pattern (21 bp):   
CTTGGAACTTGCTCCAATGAG
Done.