Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004167.1 Corchorus olitorius cultivar O-4 contig04180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37


Found at i:1016 original size:16 final size:16

Alignment explanation


    Indices: 982--1016  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        972 AATGCGATTA

                        * * 
        982 ATTTTCAAATTATCTC
          1 ATTTTCAAATTAACAC

                            
        998 ATTTTCAAATTAACAC
          1 ATTTTCAAATTAACAC

               
       1014 ATT
          1 ATT

       1017 GTATTAGTTC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46


Consensus pattern (16 bp):   
ATTTTCAAATTAACAC
Done.