Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000417.1 Corchorus olitorius cultivar O-4 contig00417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29


Found at i:434 original size:13 final size:13

Alignment explanation


    Indices: 392--436  Score: 56
    Period size: 12  Copynumber: 3.5  Consensus size: 13

        382 TCATGCACCC

                        * 
        392 AAAACAATTTATTT
          1 AAAACAATTTA-AT

                 *       
        406 AAAACCATTT-AT
          1 AAAACAATTTAAT

                         
        418 AAAACAATTTAAT
          1 AAAACAATTTAAT

                  
        431 AAAACA
          1 AAAACA

        437 GTAATAAAAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  12   10  0.37
  13    8  0.30
  14    9  0.33

ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31


Consensus pattern (13 bp):   
AAAACAATTTAAT

Found at i:878 original size:27 final size:27

Alignment explanation


    Indices: 819--870  Score: 70
    Period size: 27  Copynumber: 1.9  Consensus size: 27

        809 CTCTGGCCGT

                        *         *    
        819 TAGGGGCAAAATTGTAATTTTACCAGA
          1 TAGGGGCAAAATGGTAATTTTAACAGA

                                      
        846 TCAGGGGC-AAATGGTAATTTTAACA
          1 T-AGGGGCAAAATGGTAATTTTAACA

        871 TACTAGGGCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  27   16  0.73
  28    6  0.27

ACGTcount: A:0.37, C:0.12, G:0.23, T:0.29


Consensus pattern (27 bp):   
TAGGGGCAAAATGGTAATTTTAACAGA
Done.