Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004187.1 Corchorus olitorius cultivar O-4 contig04200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27


Found at i:284 original size:17 final size:17

Alignment explanation


    Indices: 262--294  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        252 ACCGCTAAAC

                              
        262 TAAACCTCAT-AGGTTTT
          1 TAAACCT-ATGAGGTTTT

                            
        279 TAAACCTATGAGGTTT
          1 TAAACCTATGAGGTTT

        295 GGACAATAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  16    2  0.13
  17   13  0.87

ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39


Consensus pattern (17 bp):   
TAAACCTATGAGGTTTT
Done.