Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000419.1 Corchorus olitorius cultivar O-4 contig00419, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.29


Found at i:677 original size:21 final size:21

Alignment explanation


    Indices: 653--699  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        643 CCGCTGGACA

                                  
        653 CCCAGGC-AAAATGCCTCAGCG
          1 CCCAGGCGAAAA-GCCTCAGCG

                     *   *       
        674 CCCAGGCGACAAGGCTCAGCG
          1 CCCAGGCGAAAAGCCTCAGCG

                 
        695 CCCAG
          1 CCCAG

        700 CTCGATCCTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   20  0.87
  22    3  0.13

ACGTcount: A:0.26, C:0.40, G:0.28, T:0.06


Consensus pattern (21 bp):   
CCCAGGCGAAAAGCCTCAGCG
Done.