Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004216.1 Corchorus olitorius cultivar O-4 contig04229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 692

Length: 1154
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:323 original size:22 final size:23

Alignment explanation


    Indices: 283--328  Score: 76
    Period size: 22  Copynumber: 2.0  Consensus size: 23

        273 TTCCAGCCCA

                                   
        283 CGAATAACTTGAAAAAGATATAT
          1 CGAATAACTTGAAAAAGATATAT

                 *                 
        306 CGAATGACTTG-AAAAGATATAT
          1 CGAATAACTTGAAAAAGATATAT

             
        328 C
          1 C

        329 TAGTTCCTGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  22   12  0.55
  23   10  0.45

ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26


Consensus pattern (23 bp):   
CGAATAACTTGAAAAAGATATAT
Done.