Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000423.1 Corchorus olitorius cultivar O-4 contig00423, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 671

Length: 1119
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:328 original size:16 final size:16

Alignment explanation


    Indices: 307--344  Score: 67
    Period size: 16  Copynumber: 2.4  Consensus size: 16

        297 TCAATCAATT

                           *
        307 ACAATCAACAATCATG
          1 ACAATCAACAATCATA

                            
        323 ACAATCAACAATCATA
          1 ACAATCAACAATCATA

                  
        339 ACAATC
          1 ACAATC

        345 TCTCTAGCAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18


Consensus pattern (16 bp):   
ACAATCAACAATCATA

Found at i:628 original size:2 final size:2

Alignment explanation


    Indices: 621--667  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

        611 CTCATTCATC

                                  *              *                        
        621 AT AT AT AT AT AT AT AC AT AT AT AT AC AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
        663 AT AT A
          1 AT AT A

        668 GAAATTTCTC


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45


Consensus pattern (2 bp):   
AT

Done.