Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000426.1 Corchorus olitorius cultivar O-4 contig00426, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:529 original size:25 final size:25

Alignment explanation


    Indices: 484--535  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 25

        474 TTAGATAAGT

                                     
        484 TAAAATTAATTTGTATAAAAATGCC
          1 TAAAATTAATTTGTATAAAAATGCC

                                      
        509 TAAAATTGAATTTGTATAAAAATGCC
          1 TAAAATT-AATTTGTATAAAAATGCC

             
        535 T
          1 T

        536 GTGTTATTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  25    7  0.27
  26   19  0.73

ACGTcount: A:0.46, C:0.08, G:0.10, T:0.37


Consensus pattern (25 bp):   
TAAAATTAATTTGTATAAAAATGCC
Done.