Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004268.1 Corchorus olitorius cultivar O-4 contig04281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 764

Length: 1274
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31


Found at i:290 original size:24 final size:24

Alignment explanation


    Indices: 258--306  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        248 TGCTAGACGA

                                    
        258 AATATCCGCGGCTTGTAGCAGTCT
          1 AATATCCGCGGCTTGTAGCAGTCT

                                    
        282 AATATCCGCGGCTTGTAGCAGTCT
          1 AATATCCGCGGCTTGTAGCAGTCT

             
        306 A
          1 A

        307 TGGTCCTAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.22, C:0.24, G:0.24, T:0.29


Consensus pattern (24 bp):   
AATATCCGCGGCTTGTAGCAGTCT
Done.