Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004271.1 Corchorus olitorius cultivar O-4 contig04284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 954

Length: 1591
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18


Found at i:1563 original size:6 final size:6

Alignment explanation


    Indices: 1552--1591  Score: 80
    Period size: 6  Copynumber: 6.7  Consensus size: 6

       1542 ATTCTTAGTC

                                                          
       1552 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTT
          1 GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTTGG GTTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53


Consensus pattern (6 bp):   
GTTTGG

Done.