Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004287.1 Corchorus olitorius cultivar O-4 contig04300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 938

Length: 1564
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18


Found at i:71 original size:15 final size:15

Alignment explanation


    Indices: 51--86  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

         41 GGCGATCATC

                           
         51 CAGCGGCAGCGCCAT
          1 CAGCGGCAGCGCCAT

                   *       
         66 CAGCGGCTGCGCCAT
          1 CAGCGGCAGCGCCAT

                   
         81 C-GCGGC
          1 CAGCGGC

         87 GATACGGTTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  14    5  0.25
  15   15  0.75

ACGTcount: A:0.14, C:0.42, G:0.36, T:0.08


Consensus pattern (15 bp):   
CAGCGGCAGCGCCAT
Done.