Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004297.1 Corchorus olitorius cultivar O-4 contig04310, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1157
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:396 original size:14 final size:14

Alignment explanation


    Indices: 377--407  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        367 TTTACTTGGT

                          
        377 TTGAGACGCAAGCA
          1 TTGAGACGCAAGCA

                          
        391 TTGAGACGCAAGCA
          1 TTGAGACGCAAGCA

               
        405 TTG
          1 TTG

        408 CGTCTCTACT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.32, C:0.19, G:0.29, T:0.19


Consensus pattern (14 bp):   
TTGAGACGCAAGCA
Done.