Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000043.1 Corchorus olitorius cultivar O-4 contig00043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:701 original size:21 final size:21

Alignment explanation


    Indices: 675--723  Score: 73
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        665 AAGGATCGAG

                          *       
        675 CTGGGCGCTGA-GCCTTGTCGC
          1 CTGGGCGCTGAGGCATT-TCGC

                                 
        696 CTGGGCGCTGAGGCATTTCGC
          1 CTGGGCGCTGAGGCATTTCGC

                   
        717 CTGGGCG
          1 CTGGGCG

        724 TTCGGGCTTT


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  21   22  0.85
  22    4  0.15

ACGTcount: A:0.06, C:0.31, G:0.41, T:0.22


Consensus pattern (21 bp):   
CTGGGCGCTGAGGCATTTCGC
Done.