Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000431.1 Corchorus olitorius cultivar O-4 contig00431, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:624 original size:25 final size:24

Alignment explanation


    Indices: 596--657  Score: 81
    Period size: 25  Copynumber: 2.6  Consensus size: 24

        586 GTGGATTGTA

                        *            
        596 AAATAAATTGAATAATTAAGACATT
          1 AAATAAATTGAAGAATTAA-ACATT

                     *              
        621 AAATAAATTTAAGAATTAAACATT
          1 AAATAAATTGAAGAATTAAACATT

                     *    
        645 AAA-AAATTCAAGA
          1 AAATAAATTGAAGA

        658 CTGACCCAAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  23    9  0.26
  24    8  0.24
  25   17  0.50

ACGTcount: A:0.60, C:0.05, G:0.06, T:0.29


Consensus pattern (24 bp):   
AAATAAATTGAAGAATTAAACATT
Done.