Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004333.1 Corchorus olitorius cultivar O-4 contig04347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Found at i:616 original size:22 final size:24

Alignment explanation


    Indices: 577--624  Score: 82
    Period size: 23  Copynumber: 2.1  Consensus size: 24

        567 TCGAAAAAGC

                                    
        577 AGTAGACACATTTACAT-AAGTTG
          1 AGTAGACACATTTACATAAAGTTG

                                    
        600 AGTAGACACA-TTACATAAAGTTG
          1 AGTAGACACATTTACATAAAGTTG

              
        623 AG
          1 AG

        625 AAGGTGCTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  22    6  0.25
  23   18  0.75

ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27


Consensus pattern (24 bp):   
AGTAGACACATTTACATAAAGTTG
Done.