Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004341.1 Corchorus olitorius cultivar O-4 contig04355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1447
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16


Found at i:840 original size:12 final size:12

Alignment explanation


    Indices: 823--861  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        813 TGCCGGGTCG

                  *     
        823 GCAGGTTGGCCA
          1 GCAGGTAGGCCA

                   *    
        835 GCAGGTACGCCA
          1 GCAGGTAGGCCA

              *         
        847 GCGGGTAGGCCA
          1 GCAGGTAGGCCA

               
        859 GCA
          1 GCA

        862 CCAGGCAGAT


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.21, C:0.28, G:0.41, T:0.10


Consensus pattern (12 bp):   
GCAGGTAGGCCA
Done.