Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004352.1 Corchorus olitorius cultivar O-4 contig04366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29


Found at i:983 original size:25 final size:25

Alignment explanation


    Indices: 954--1004  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        944 TGGGGCTAGT

                                     
        954 TATAAATAGCTTATCTTACATACGA
          1 TATAAATAGCTTATCTTACATACGA

                     *       *       
        979 TATAAATAGTTTATCTTTCATACGA
          1 TATAAATAGCTTATCTTACATACGA

             
       1004 T
          1 T

       1005 CTGGGCTCTT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41


Consensus pattern (25 bp):   
TATAAATAGCTTATCTTACATACGA
Done.