Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004355.1 Corchorus olitorius cultivar O-4 contig04369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17


Found at i:299 original size:9 final size:9

Alignment explanation


    Indices: 285--309  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        275 AGCCGTCGCG

                     
        285 GTTCCTGCC
          1 GTTCCTGCC

                     
        294 GTTCCTGCC
          1 GTTCCTGCC

                   
        303 GTTCCTG
          1 GTTCCTG

        310 TTCCAGTGGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.40, G:0.24, T:0.36


Consensus pattern (9 bp):   
GTTCCTGCC
Done.