Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000438.1 Corchorus olitorius cultivar O-4 contig00438, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33


Found at i:564 original size:29 final size:29

Alignment explanation


    Indices: 505--564  Score: 68
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        495 ATGATTTAGG

                      *              **  
        505 GGTTACTAACTCCCTTTTTTTTCTTTTGA
          1 GGTTACTAACACCCTTTTTTTTCTTCAGA

                        *                 
        534 GGTTACTAACACTCTATTTTTTT-TTCAGA
          1 GGTTACTAACACCCT-TTTTTTTCTTCAGA

              
        563 GG
          1 GG

        565 GACAATACTT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  29   19  0.73
  30    7  0.27

ACGTcount: A:0.18, C:0.18, G:0.13, T:0.50


Consensus pattern (29 bp):   
GGTTACTAACACCCTTTTTTTTCTTCAGA
Done.