Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004382.1 Corchorus olitorius cultivar O-4 contig04397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 710

Length: 1184
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33


Found at i:748 original size:21 final size:21

Alignment explanation


    Indices: 722--834  Score: 149
    Period size: 21  Copynumber: 5.4  Consensus size: 21

        712 TGCTAGAAGT

                                 
        722 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                                 
        743 TCATTGGAGCAAGTTCCAAGC
          1 TCATTGGAGCAAGTTCCAAGC

                       *   *    *
        764 TCATTGGAGCAGGTTACAAGT
          1 TCATTGGAGCAAGTTCCAAGC

                                 *
        785 TCATTGGAG-AAGGTTCCAAGA
          1 TCATTGGAGCAA-GTTCCAAGC

                            *     
        806 TCATTGGAG-AAGGTTTCAAGC
          1 TCATTGGAGCAA-GTTCCAAGC

                    
        827 TCATTGGA
          1 TCATTGGA

        835 AATGCCTAAG


Statistics
Matches: 83,  Mismatches: 8, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
  20    1  0.01
  21   82  0.99

ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGCAAGTTCCAAGC

Done.