Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000439.1 Corchorus olitorius cultivar O-4 contig00439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5132
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:5021 original size:23 final size:22

Alignment explanation


    Indices: 4985--5066  Score: 65
    Period size: 26  Copynumber: 3.4  Consensus size: 22

       4975 TAGATTGGTG

                 *   *             
       4985 GAAAATTTGATGAAGAACTGAGT
          1 GAAAACTTGTTGAAGAACTGA-T

                                      
       5008 GAAAACTTGTTGAAGAACAACTTGAT
          1 GAAAACTTGTTGAAG---AAC-TGAT

               *                    
       5034 GAAGACTTGTTGAAGAACTTTGAT
          1 GAAAACTTGTTGAAGAAC--TGAT

                     
       5058 GAATAACTT
          1 GAA-AACTT

       5067 TGGTGGAGAC


Statistics
Matches: 49,  Mismatches: 4, Indels: 10
        0.78            0.06        0.16

Matches are distributed among these distances:
  23   16  0.33
  24    8  0.16
  25    4  0.08
  26   18  0.37
  27    3  0.06

ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29


Consensus pattern (22 bp):   
GAAAACTTGTTGAAGAACTGAT
Done.