Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000443.1 Corchorus olitorius cultivar O-4 contig00443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27


Found at i:276 original size:52 final size:51

Alignment explanation


    Indices: 198--298  Score: 175
    Period size: 52  Copynumber: 2.0  Consensus size: 51

        188 TAAAAAAAAT

                                            *                   
        198 GCCTGCTAAGTTGAAAACCCCATTGGGGCGGCTTAGGCAAAAGTTAAGGCAA
          1 GCCTGCTAAGTTGAAAACCCCATTGGGGCGGCCTAGGCAAAAG-TAAGGCAA

                    *                                        
        250 GCCTGCTAGGTTGAAAACCCCATTGGGGCGGCCTAGGCAAAAGTAAGGC
          1 GCCTGCTAAGTTGAAAACCCCATTGGGGCGGCCTAGGCAAAAGTAAGGC

        299 TAAAAAAAAA


Statistics
Matches: 47,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  51    6  0.13
  52   41  0.87

ACGTcount: A:0.29, C:0.23, G:0.31, T:0.18


Consensus pattern (51 bp):   
GCCTGCTAAGTTGAAAACCCCATTGGGGCGGCCTAGGCAAAAGTAAGGCAA
Done.