Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004449.1 Corchorus olitorius cultivar O-4 contig04464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1251 original size:14 final size:14

Alignment explanation


    Indices: 1234--1269  Score: 63
    Period size: 14  Copynumber: 2.6  Consensus size: 14

       1224 TAAAAAGNTA

                      *   
       1234 AAAAAAAAACGCAG
          1 AAAAAAAAACACAG

                          
       1248 AAAAAAAAACACAG
          1 AAAAAAAAACACAG

                    
       1262 AAAAAAAA
          1 AAAAAAAA

       1270 TAGCGGGTCG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   21  1.00

ACGTcount: A:0.81, C:0.11, G:0.08, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAACACAG
Done.