Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004452.1 Corchorus olitorius cultivar O-4 contig04467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29


Found at i:587 original size:24 final size:24

Alignment explanation


    Indices: 560--610  Score: 102
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        550 CCTACGCTAA

                                    
        560 TTCATCAGATGCCATTTATTCTCT
          1 TTCATCAGATGCCATTTATTCTCT

                                    
        584 TTCATCAGATGCCATTTATTCTCT
          1 TTCATCAGATGCCATTTATTCTCT

               
        608 TTC
          1 TTC

        611 GACTATAAGG


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.20, C:0.25, G:0.08, T:0.47


Consensus pattern (24 bp):   
TTCATCAGATGCCATTTATTCTCT
Done.