Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004467.1 Corchorus olitorius cultivar O-4 contig04482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40


Found at i:474 original size:17 final size:17

Alignment explanation


    Indices: 452--485  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        442 ATCCGGTTTT

                             
        452 CAATTTAAGAGTTCAAA
          1 CAATTTAAGAGTTCAAA

                  *          
        469 CAATTTTAGAGTTCAAA
          1 CAATTTAAGAGTTCAAA

        486 TAAGAAGATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32


Consensus pattern (17 bp):   
CAATTTAAGAGTTCAAA
Done.