Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004470.1 Corchorus olitorius cultivar O-4 contig04485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34


Found at i:470 original size:63 final size:63

Alignment explanation


    Indices: 391--509  Score: 186
    Period size: 63  Copynumber: 1.9  Consensus size: 63

        381 AACCGATGGG

                 *                                                          
        391 TTTATGTATAATACACCGT-ATGTGGAGTTTAGCAGACTGAACAAGCGGGTCTTGAAGGGACTA
          1 TTTATATATAATACACCGTCA-GTGGAGTTTAGCAGACTGAACAAGCGGGTCTTGAAGGGACTA

                                   *               *  *             
        454 TTTATATATAATACACCGTCAGTTGAGTTTAGCAGACTGCACTAGCGGGTCTTGAA
          1 TTTATATATAATACACCGTCAGTGGAGTTTAGCAGACTGAACAAGCGGGTCTTGAA

        510 AGGCGACATG


Statistics
Matches: 51,  Mismatches: 4, Indels: 2
        0.89            0.07        0.04

Matches are distributed among these distances:
  63   50  0.98
  64    1  0.02

ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30


Consensus pattern (63 bp):   
TTTATATATAATACACCGTCAGTGGAGTTTAGCAGACTGAACAAGCGGGTCTTGAAGGGACTA
Done.