Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000448.1 Corchorus olitorius cultivar O-4 contig00448, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 703

Length: 1173
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:671 original size:21 final size:19

Alignment explanation


    Indices: 646--703  Score: 80
    Period size: 19  Copynumber: 2.9  Consensus size: 19

        636 GCTACTCTAA

                                 
        646 TAATCTCATCTGTACAGTACC
          1 TAATCTCATCTGTACAGT--C

                  *           *
        667 TAATCTAATCTGTACAGTG
          1 TAATCTCATCTGTACAGTC

                              
        686 TAATCTCATCTGTACAGT
          1 TAATCTCATCTGTACAGT

        704 TGCTAAATAG


Statistics
Matches: 34,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
  19   17  0.50
  21   17  0.50

ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36


Consensus pattern (19 bp):   
TAATCTCATCTGTACAGTC
Done.