Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004481.1 Corchorus olitorius cultivar O-4 contig04497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:918 original size:27 final size:27

Alignment explanation


    Indices: 888--942  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        878 GAACTTGCAT

                                       
        888 CAACCAGCTCGGCATTTACTTTAACTG
          1 CAACCAGCTCGGCATTTACTTTAACTG

                                       
        915 CAACCAGCTCGGCATTTACTTTAACTG
          1 CAACCAGCTCGGCATTTACTTTAACTG

             
        942 C
          1 C

        943 TAGGTATGGG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29


Consensus pattern (27 bp):   
CAACCAGCTCGGCATTTACTTTAACTG
Done.