Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000450.1 Corchorus olitorius cultivar O-4 contig00450, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3188
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37


Found at i:2956 original size:35 final size:36

Alignment explanation


    Indices: 2829--2996  Score: 184
    Period size: 34  Copynumber: 4.7  Consensus size: 36

       2819 CTGAAAATGA

                            *  *           *    *
       2829 TGGGAACTTTCCCTAAATTGAAAAC-TAAAACCTT-A
          1 TGGGAACTTTCCC-AATTTAAAAACTTAAAAACTTGG

                    *                             
       2864 TGGGAACTCTCCCAATTTAAAAACTTTGAAAAAC-TGG
          1 TGGGAACTTTCCCAATTTAAAAAC-TT-AAAAACTTGG

                   *          *                *
       2901 TGGGAACCTTCCCAATTTTAAAACTTAAAAACTTGT
          1 TGGGAACTTTCCCAATTTAAAAACTTAAAAACTTGG

                                            *   
       2937 TGGGAACTTTCCCAATTTAAAAAC-T-AAAACCTGG
          1 TGGGAACTTTCCCAATTTAAAAACTTAAAAACTTGG

                              *       
       2971 TGGGAACTTTCCCAATTTGAAAACTT
          1 TGGGAACTTTCCCAATTTAAAAACTT

       2997 CGAAGACTGA


Statistics
Matches: 113,  Mismatches: 14, Indels: 12
        0.81            0.10        0.09

Matches are distributed among these distances:
  34   39  0.35
  35   20  0.18
  36   28  0.25
  37   26  0.23

ACGTcount: A:0.37, C:0.20, G:0.14, T:0.30


Consensus pattern (36 bp):   
TGGGAACTTTCCCAATTTAAAAACTTAAAAACTTGG

Done.