Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000452.1 Corchorus olitorius cultivar O-4 contig00452, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 768

Length: 1280
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32


Found at i:630 original size:21 final size:21

Alignment explanation


    Indices: 596--635  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        586 GGTTTCCCTT

                     *           
        596 GTCCGCTATTTCCACAGGTCC
          1 GTCCGCTATATCCACAGGTCC

                   *      *    
        617 GTCCGCTGTATCCATAGGT
          1 GTCCGCTATATCCACAGGT

        636 TCAAGGTCTC


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.15, C:0.33, G:0.23, T:0.30


Consensus pattern (21 bp):   
GTCCGCTATATCCACAGGTCC
Done.