Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004524.1 Corchorus olitorius cultivar O-4 contig04540, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1207
ACGTcount: A:0.15, C:0.36, G:0.34, T:0.15


Found at i:201 original size:25 final size:25

Alignment explanation


    Indices: 173--220  Score: 62
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        163 ACCTGGAGAA

                *                     
        173 GGCGCTGAACGCC-GCCAACGCCATC
          1 GGCGATGAACGCCTG-CAACGCCATC

                    *              
        198 GGCGATGATCGCCTGCAACGCCA
          1 GGCGATGAACGCCTGCAACGCCA

        221 GTCCCAGGGC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  25   19  0.95
  26    1  0.05

ACGTcount: A:0.21, C:0.40, G:0.29, T:0.10


Consensus pattern (25 bp):   
GGCGATGAACGCCTGCAACGCCATC
Done.