Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004526.1 Corchorus olitorius cultivar O-4 contig04542, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1523
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:1326 original size:19 final size:19

Alignment explanation


    Indices: 1302--1339  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1292 AGCCTTCCTG

                               
       1302 TTTGTTCGGCAAAGAAAGT
          1 TTTGTTCGGCAAAGAAAGT

                               
       1321 TTTGTTCGGCAAAGAAAGT
          1 TTTGTTCGGCAAAGAAAGT

       1340 CTGTACGCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32


Consensus pattern (19 bp):   
TTTGTTCGGCAAAGAAAGT
Done.