Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004547.1 Corchorus olitorius cultivar O-4 contig04563, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1298
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:650 original size:14 final size:14

Alignment explanation


    Indices: 633--669  Score: 56
    Period size: 14  Copynumber: 2.6  Consensus size: 14

        623 TACGGCTTAA

                          
        633 TGCCTAAAGCCTAT
          1 TGCCTAAAGCCTAT

                *  *      
        647 TGCCCAATGCCTAT
          1 TGCCTAAAGCCTAT

                     
        661 TGCCTAAAG
          1 TGCCTAAAG

        670 TCACAAGGCA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27


Consensus pattern (14 bp):   
TGCCTAAAGCCTAT

Found at i:833 original size:14 final size:14

Alignment explanation


    Indices: 814--840  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        804 ACGGCTTAAA

                          
        814 GCCTAAAGCCTATT
          1 GCCTAAAGCCTATT

                         
        828 GCCTAAAGCCTAT
          1 GCCTAAAGCCTAT

        841 GTATTATTTC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26


Consensus pattern (14 bp):   
GCCTAAAGCCTATT
Done.