Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004548.1 Corchorus olitorius cultivar O-4 contig04564, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1060
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27


Found at i:226 original size:21 final size:21

Alignment explanation


    Indices: 188--232  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        178 TGGTCGGGTA

                        *        
        188 TCGGCGGTCAGCTATCGGCAG
          1 TCGGCGGTCAGCGATCGGCAG

                     *   *     * 
        209 TCGGCGGTCGGCGGTCGGCTG
          1 TCGGCGGTCAGCGATCGGCAG

               
        230 TCG
          1 TCG

        233 AAAGGATATA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.07, C:0.29, G:0.44, T:0.20


Consensus pattern (21 bp):   
TCGGCGGTCAGCGATCGGCAG

Found at i:292 original size:14 final size:14

Alignment explanation


    Indices: 275--304  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        265 ATAGCCCATC

                          
        275 GCTGAAAGCCGACA
          1 GCTGAAAGCCGACA

                          
        289 GCTGAAAGCCGACA
          1 GCTGAAAGCCGACA

              
        303 GC
          1 GC

        305 CGACAACCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.33, C:0.30, G:0.30, T:0.07


Consensus pattern (14 bp):   
GCTGAAAGCCGACA
Done.