Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000455.1 Corchorus olitorius cultivar O-4 contig00455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1532
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:682 original size:20 final size:22

Alignment explanation


    Indices: 637--683  Score: 62
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        627 AATATTACCC

                        *      *  
        637 TAATTATTTTTGGCAGACATAA
          1 TAATTATTTTTGCCAGACAAAA

                                  
        659 TAATTATTTTTGCCA-A-AAAA
          1 TAATTATTTTTGCCAGACAAAA

                 
        679 TAATT
          1 TAATT

        684 TTAAGCAATA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  20    8  0.35
  21    1  0.04
  22   14  0.61

ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43


Consensus pattern (22 bp):   
TAATTATTTTTGCCAGACAAAA

Found at i:695 original size:13 final size:13

Alignment explanation


    Indices: 677--701  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        667 TTTGCCAAAA

                         
        677 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
        690 AATAATTTTAAG
          1 AATAATTTTAAG

        702 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.