Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004561.1 Corchorus olitorius cultivar O-4 contig04577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1128
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42


Found at i:9 original size:2 final size:2

Alignment explanation


    Indices: 3--40  Score: 67
    Period size: 2  Copynumber: 18.5  Consensus size: 2

          1 TG

                                                                    
          3 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A

         41 AAGTATTTTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   2   33  0.94
   3    2  0.06

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.