Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000457.1 Corchorus olitorius cultivar O-4 contig00457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1397
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:610 original size:14 final size:13

Alignment explanation


    Indices: 585--609  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        575 TTTTTTCAAA

                         
        585 TTACAATTTTTTC
          1 TTACAATTTTTTC

                        
        598 TTACAATTTTTT
          1 TTACAATTTTTT

        610 TTTTGATTTA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64


Consensus pattern (13 bp):   
TTACAATTTTTTC
Done.