Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004571.1 Corchorus olitorius cultivar O-4 contig04587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1870
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15


Found at i:660 original size:14 final size:14

Alignment explanation


    Indices: 641--669  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        631 AGCACGCCTC

                          
        641 GTCCGGGCGCTACA
          1 GTCCGGGCGCTACA

                          
        655 GTCCGGGCGCTACA
          1 GTCCGGGCGCTACA

             
        669 G
          1 G

        670 AAACGCACCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.14, C:0.34, G:0.38, T:0.14


Consensus pattern (14 bp):   
GTCCGGGCGCTACA
Done.