Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004572.1 Corchorus olitorius cultivar O-4 contig04588, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 733

Length: 1223
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:1185 original size:72 final size:72

Alignment explanation


    Indices: 1068--1207  Score: 253
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       1058 ACTAGGCACT

                           *               *                                 
       1068 AGGCAAAGAGTGTTGGATGTTATTTAGTACCGTAGATGTGTTTTTGCTTAATGCCTACAGCTTAC
          1 AGGCAAAGAGTGTTGAATGTTATTTAGTACCATAGATGTGTTTTTGCTTAATGCCTACAGCTTAC

                   
       1133 AGCCTAA
         66 AGCCTAA

                                                                      *      
       1140 AGGCAAAGAGTGTTGAATGTTATTTAGTACCATAGATGTGTTTTTGCTTAATGCCTACGGCTTAC
          1 AGGCAAAGAGTGTTGAATGTTATTTAGTACCATAGATGTGTTTTTGCTTAATGCCTACAGCTTAC

               
       1205 AGC
         66 AGC

       1208 TTACAGCCTA


Statistics
Matches: 65,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  72   65  1.00

ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35


Consensus pattern (72 bp):   
AGGCAAAGAGTGTTGAATGTTATTTAGTACCATAGATGTGTTTTTGCTTAATGCCTACAGCTTAC
AGCCTAA
Done.