Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004579.1 Corchorus olitorius cultivar O-4 contig04595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.17, C:0.32, G:0.35, T:0.16


Found at i:701 original size:12 final size:12

Alignment explanation


    Indices: 671--702  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        661 GCGACAGGAA

                  *     
        671 CAGCGACACGGC
          1 CAGCGAGACGGC

                        
        683 CAGCGAGACGGC
          1 CAGCGAGACGGC

                    
        695 CAGCGAGA
          1 CAGCGAGA

        703 TCGCGATGGT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.28, C:0.34, G:0.38, T:0.00


Consensus pattern (12 bp):   
CAGCGAGACGGC
Done.