Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000458.1 Corchorus olitorius cultivar O-4 contig00458, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:568 original size:19 final size:18

Alignment explanation


    Indices: 533--571  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 18

        523 CATTGAGATT

                              
        533 ATTCTTCAATGATCTTCA
          1 ATTCTTCAATGATCTTCA

                       *       
        551 ATTCTTCAAATTATCTTCA
          1 ATTCTTC-AATGATCTTCA

              
        570 AT
          1 AT

        572 AAATCTTCAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    7  0.37
  19   12  0.63

ACGTcount: A:0.31, C:0.21, G:0.03, T:0.46


Consensus pattern (18 bp):   
ATTCTTCAATGATCTTCA
Done.