Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004597.1 Corchorus olitorius cultivar O-4 contig04613, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 983

Length: 1639
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28


Found at i:1267 original size:21 final size:21

Alignment explanation


    Indices: 1237--1277  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1227 CTTCAGGCAA

                      *          
       1237 TACAGAAAACGGTTTACTGTT
          1 TACAGAAAACCGTTTACTGTT

                 *         *    
       1258 TACAGTAAACCGTTTTCTGT
          1 TACAGAAAACCGTTTACTGT

       1278 ATTGCCGAAG


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37


Consensus pattern (21 bp):   
TACAGAAAACCGTTTACTGTT
Done.