Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004612.1 Corchorus olitorius cultivar O-4 contig04628, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1217
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36


Found at i:1006 original size:19 final size:19

Alignment explanation


    Indices: 982--1038  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

        972 CAAACTTTTC

                               
        982 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

                               
       1001 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

                               
       1020 ATTGATCTATTTTTTTCAT
          1 ATTGATCTATTTTTTTCAT

       1039 TGGGATTCAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63


Consensus pattern (19 bp):   
ATTGATCTATTTTTTTCAT

Done.