Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004627.1 Corchorus olitorius cultivar O-4 contig04643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32


Found at i:1270 original size:7 final size:7

Alignment explanation


    Indices: 1258--1307  Score: 100
    Period size: 7  Copynumber: 7.1  Consensus size: 7

       1248 GCCGAAGGAG

                   
       1258 GTTGATA
          1 GTTGATA

                   
       1265 GTTGATA
          1 GTTGATA

                   
       1272 GTTGATA
          1 GTTGATA

                   
       1279 GTTGATA
          1 GTTGATA

                   
       1286 GTTGATA
          1 GTTGATA

                   
       1293 GTTGATA
          1 GTTGATA

                   
       1300 GTTGATA
          1 GTTGATA

             
       1307 G
          1 G


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   43  1.00

ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42


Consensus pattern (7 bp):   
GTTGATA

Done.