Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004634.1 Corchorus olitorius cultivar O-4 contig04650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32


Found at i:246 original size:27 final size:27

Alignment explanation


    Indices: 216--275  Score: 111
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        206 ATAAGGCAAT

                               *       
        216 ACGCTCGCTGACAACGAGATGCTGAAG
          1 ACGCTCGCTGACAACGAGAGGCTGAAG

                                       
        243 ACGCTCGCTGACAACGAGAGGCTGAAG
          1 ACGCTCGCTGACAACGAGAGGCTGAAG

                  
        270 ACGCTC
          1 ACGCTC

        276 TTGAGCATCA


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   32  1.00

ACGTcount: A:0.28, C:0.28, G:0.30, T:0.13


Consensus pattern (27 bp):   
ACGCTCGCTGACAACGAGAGGCTGAAG
Done.