Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004641.1 Corchorus olitorius cultivar O-4 contig04657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21


Found at i:64 original size:20 final size:20

Alignment explanation


    Indices: 41--81  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 20

         31 GCCCTTGCCT

                                 
         41 TTGC-CGCCTTGGCCGCGTCC
          1 TTGCGCGCCTTGGCCGC-TCC

                 *              
         61 TTGCGTGCCTTGGCCGCTCC
          1 TTGCGCGCCTTGGCCGCTCC

             
         81 T
          1 T

         82 GGTGCGGCGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20    8  0.42
  21   11  0.58

ACGTcount: A:0.00, C:0.41, G:0.29, T:0.29


Consensus pattern (20 bp):   
TTGCGCGCCTTGGCCGCTCC
Done.