Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004643.1 Corchorus olitorius cultivar O-4 contig04659, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:841 original size:14 final size:14

Alignment explanation


    Indices: 822--849  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        812 TTTTTTTTCT

                          
        822 AAAAATTAGGTTCA
          1 AAAAATTAGGTTCA

                          
        836 AAAAATTAGGTTCA
          1 AAAAATTAGGTTCA

        850 GTGGACAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29


Consensus pattern (14 bp):   
AAAAATTAGGTTCA
Done.