Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004648.1 Corchorus olitorius cultivar O-4 contig04664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 830

Length: 1384
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32


Found at i:1273 original size:15 final size:15

Alignment explanation


    Indices: 1255--1287  Score: 50
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1245 TAATTTCCTC

                            
       1255 TTCA-CCGGCAATAAT
          1 TTCATCCGG-AATAAT

                           
       1270 TTCATCCGGAATAAT
          1 TTCATCCGGAATAAT

               
       1285 TTC
          1 TTC

       1288 GGTAATATCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15   13  0.76
  16    4  0.24

ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33


Consensus pattern (15 bp):   
TTCATCCGGAATAAT
Done.