Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01004665.1 Corchorus olitorius cultivar O-4 contig04681, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.29


Found at i:679 original size:12 final size:12

Alignment explanation


    Indices: 658--688  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        648 TAATAGAAAT

                 *      
        658 ACAGGTAATAAG
          1 ACAGGCAATAAG

                        
        670 ACAGGCAATAAG
          1 ACAGGCAATAAG

                   
        682 ACAGGCA
          1 ACAGGCA

        689 TTAGACCATG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.48, C:0.16, G:0.26, T:0.10


Consensus pattern (12 bp):   
ACAGGCAATAAG
Done.